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Publication record of the Deppenmeier lab


Wienberg, F., Hövels, M., & Deppenmeier, U. (2022). High-yield production and purification of prebiotic inulin-type fructooligosaccharides. AMB Express12(1), 144. 

Ehinger, F. J., Neff, A., Kosciow, K., Netzband, L., & Hövels, M. (2022) Rapid, real-time sucrase characterization: Showcasing the feasibility of a one-pot activity assay. Journal of Biotechnology354, 21-33.


Pohlentz, J. C., Gallala, N., Kosciow, K., & Hövels, M.* (2022) Growth behavior of probiotic microorganisms on levan- and inulin-based fructans. Journal of Functional Foods99, 105343.


Hövels, M., Gallala, N., Keriakes, S., König, A. P., Schiessl, J., Laporte, T., Kosciow, K., Deppenmeier, U.* (2022) 5-Keto-D-fructose, a natural diketone and potential sugar substitute, significantly reduces the viability of prokaryotic and eukaryotic cells. Frontiers in Microbiology13.

DOI: 10.3389/fmicb.2022.935062

Lück, R., & Deppenmeier, U.* (2022). Genetic tools for the redirection of the central carbon flow towards the production of lactate in the human gut bacterium Phocaeicola (Bacteroides) vulgatus. Applied Microbiology and Biotechnology, 1-15.



Steiniger, F.1 , Sorokin, D. Y. & Deppenmeier, U.* (2021). Process of energy-conservation in the extremely haloalkaliphilic methyl-reducing methanogen Methanonatronarchaeum thermophilum. The FEBS Journal.


Schiessl, J., Kosciow, K., Garschagen, L. S., Hoffmann, J. J., Heymuth, J., Franke, T. & Deppenmeier U.* (2021). Degradation of the low-calorie sugar substitute 5-ketofructose by different bacteria. Appl Microbiol Biotechnol.


Wienberg, F., Hövels, M., Kosciow K. & Deppenmeier U.* (2020). High-resolution method for isocratic HPLC analysis of inulin-type fructooligosaccharides. Journal of Chromatography B.

Hövels, M., Kosciow, K. & Deppenmeier U.* (2020). Characterization of novel
endolevanase from Azotobacter chroococcum DSM 2286 and its application for the production of prebiotic fructooligosaccharides. Carbohydrate Polymers.

Garschagen, L. S.1 , Franke, T. & Deppenmeier, U.* (2020). An alternative pentose phosphate pathway in human gut bacteria for the degradation of C5 sugars in dietary fibers. The FEBS Journal
FEBS Journal Commentary

Hövels, M., Kosciow, K., Kniewel, J., Jakob, F. & Deppenmeier, U.* (2020). High yield production of levan-type fructans by Gluconobacter japonicus LMG 1417. International Journal of Biological Macromolecules

Kosciow, K. & Deppenmeier, U.* (2020). Characterization of three novel β-galactosidases from Akkermansia muciniphila involved in mucin degradation. International Journal of Biological Macromolecules.
Hoffmann, J. J., Hövels, M., Kosciow, K. & Deppenmeier, U.* (2020) Synthesis of the alternative sweetener 5-ketofructose from sucrose by fructose dehydrogenase and invertase producing Gluconobacter strains. Journal of biotechnology. 


Deppenmeier, U., Hövels, M. & Kosciow, K. (2019): Enzymatic production of
levan-based, prebiotic fructooligosaccharides (EnProLevO). Europäisches
Patentregister (WO/2020/260249).
Kröninger, L., Steiniger, F.,  Berger. S., Kraus, S., Welte, C. U. and Deppenmeier, U.* (2019) Energy conservation in the gut microbe Methanomassiliicoccus luminyensis is based on membrane-bound ferredoxin oxidation coupled to heterodisulfide reduction. The FEBS journal. 

Kosciow, K., Deppenmeier, U.* (2019) Characterization of a phospholipid-regulated β-galactosidase from Akkermansia muciniphila involved in mucin degradation. MicrobiologyOpen, e796.



Büchs, J., Deppenmeier, U., Bott, M., Kiefler, I., Kosciow, K., Herweg, E., Siemen, A. (2018) Methods of producing 5-ketofructose. World Intellectual Property Organization WO 2018/229161. PCT/EP2018/065724.

Franke, T., Deppenmeier, U.* (2018) Physiology and central carbon metabolism of the gut bacterium Prevotella copri. Mol Microbiol. 109(4):528-540. doi: 10.1111/mmi.14058
F1000Prime Recommended

Fischer, M. A., Güllert, S., Refai, S., Künzel, S., Deppenmeier, U., Streit, W. R., Schmitz, R. A. (2018) Long-term investigation of microbial community composition and transcription patterns in a biogas plant undergoing ammonia crisis. Microbial Biotechnol. (review process).

Siemen, A., Kosciow, K., Schweiger, P., Deppenmeier, U.* (2018) Production of 5-ketofructose from fructose or sucrose using genetically modified Gluconobacter oxydans strains. Appl Microbiol Biotechnol. 102(4):1699-1710.

Herweg, E., Schöpping, M., Rohra, K., Siemen, A., Frank, O., Hofmann, T., Deppenmeier, U., Büchs, J. (2018) Production of the potential sweetener 5-ketofructose from fructose in fed-batch cultivation with Gluconobacter oxydans. Bioresour. Technol. 259:164-172.



Kröninger, L., Gottschling, J., Deppenmeier, U.* (2017) Growth parameters of Methanomassiliicoccus luminyensis and expression of methyltransferase encoding genes. Archaea 2017: 2756573. doi: 10.1155/2017/2756573. eCollection 2017.

Refai, S., Berger, S., Wassmann, K., Hecht, M., Dickhaus, T., Deppenmeier, U.* (2017) BEAP profiles as rapid test system for status analysis and early detection of process incidents in biogas plants. J Ind Microbiol Biotechnol. doi: 10.1007/s10295-016-1894-8. Link



Zahid, N., Deppenmeier, U.* (2016) Role of mannitol dehydrogenases in osmoprotection of Gluconobacter oxydans. Appl Microbiol Biot. 100: 1-12. Link

Kosciow, K., Domin, C., Schweiger, P., Deppenmeier, U.* (2016) Extracellular targeting of an active endoxylanase by a TolB negative mutant of Gluconobacter oxydans. J Ind Microbiol Biot. doi:10.1007/s10295-016-1770-6. Link

Kröninger, L., Berger, S., Welte, C., Deppenmeier, U.* (2016) Evidence for the involvement of two different heterodisulfide reductases in the energy conserving system of Methanomassiliicoccus luminyensis. FEBS J. 283: 472-483.

Kern, T., Fischer, M. A., Deppenmeier, U., Schmitz, R. A., Rother, M.* (2016) Methanosarcina flavescens sp. nov., a methanogenic archaeon isolated from a full-scale anaerobic digester. Int J Syst Evol Microbiol. 66: 1533-1538.

Beckmann, S., Welte, C., Li, X., Oo, Y. M., Kroeninger, L., Heo, Y., Zhang, M., Ribeiro, D., Lee, M., Bhadbhade, M., Maria, C. E., Seidel, J., Deppenmeier, U., Manefield, M.* (2016) Novel phenazine crystals enable direct electron transfer to methanogens in anaerobic digestion by redox potential modulation. Energy Environ Sci. 9: 644-655.



Zahid N., Schweiger P., Galinski E., Deppenmeier U.* (2015) Identification of mannitol as compatible solute in Gluconobacter oxydans. Appl Microbiol Biotechnol. 99: 5511-5521. Link

Meyer M., Schweiger P., Deppenmeier U.* (2015) Succinic semialdehyde reductase Gox1801 from Gluconobacter oxydans in comparison to other succinic semialdehyde reducing enzymes. Appl Microbiol Biotechnol. 99: 3929-3939. Link

Deppenmeier U* (2015) How to make Gluconobacter oxydans fit for the future. Acetic acid bacteria 4, 14.


Kosciow K., Zahid N., Schweiger P. and Deppenmeier U. (2014) Production of a periplasmic trehalase in Gluconobacter oxydans and growth on trehalose. J Biotechnol. 189: 27-35.

Refai S., Wassmann K., Berger S., Deppenmeier U.* (2014) Increase of methane formation by ethanol addition during continuous fermentation of biogas sludge. J Ind Microbiol Biotechnol. 41:1763-72. Link

Welte, C.*, Kroeninger, L., Deppenmeier, U. (2014) Experimental evidence of an acetate transporter protein and characterization of acetate activation in aceticlastic methanogenesis of Methanosarcina mazei. FEMS Microbiol Lett. 359:147-53.

Refai S., Wassmann K., Deppenmeier U.* (2014) Short term effect of acetate and ethanol on methane formation in biogas sludge. Appl Microbiol Biotechnol. 98: 7271-7280. Link

Refai S., Berger S., Wassmann K. and Deppenmeier U.* (2014) Quantification of methanogenic heterodisulfide reductase activity in biogas sludge. J Biotechnol. 180:66-69.

Zeiser J., Muehlenbeck L., Schweiger P. and Deppenmeier U.* (2014) Characterization of a periplasmic quinoprotein from Sphingomonas wittichii that functions as aldehyde dehydrogenase. Appl Microbiol Biotechnol. 98: 2067-2079. Link

Welte C., Deppenmeier U.* (2014) Bioenergetics and anaerobic respiratory chains of aceticlastic methanogens. Biochim Biophys Acta. 1837: 1130-1147. 



Schweiger, P.*, Gross, H., Zeiser, J., Deppenmeier, U. (2013) Asymetric reduction of diketones by two Gluconobacter oxydans oxidoreductases. Appl Microbiol Biotechnol 97: 3475-84. Link

Meyer, M., Schweiger, P., Deppenmeier, U.* (2013) Effects of membrane-bound glucose dehydrogenase overproduction on the respiratory chain of Gluconobacter oxydans. Appl Microbiol Biotechnol 97: 3457-66. Link

Welte, C., Deppenmeier, U. (2013) Blackbox für Biogas. Laborpraxis 37: 14-16.



Nelson-Sathi S, Dagan T, Landan G, Janssen A, Steel M, McInerney JO, Deppenmeier U, Martin WF* (2012) Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. PNAS 109: 20537-42.

Schlegel, K., Welte, C., Deppenmeier, U., Müller, V.* (2012) Electron transport during aceticlastic methanogenesis by Methanosarcina acetivorans involves a sodium-translocating Rnf complex. FEBS J 279: 4444-52.

Berger, S., Welte, C., Deppenmeier, U.* (2012) Acetate activation in Methanosaeta thermophila: characterization of the key enzymes pyrophosphatase and acetyl-CoA synthetase. Archaea, 315153.

Mondorf, S., Deppenmeier, U., Welte, C.* (2012) A novel inducible protein production system and neomycin resistance as selection marker for Methanosarcina mazei. Archaea, 973743.

Welte, C., Deppenmeier, U.* (2012) Protonen-Translokation in Methanogenen. BIOspektrum 2/2012: 159-61.



Welte C., Deppenmeier U.* (2011) Proton translocation in methanogens. Methods Enzymol. 494:257-80.

Kallnik V., Schulz C., Schweiger P., Deppenmeier U.* (2011) Properties of recombinant Strep-tagged and untagged hyperthermophilic D-arabitol dehydrogenase from Thermotoga maritima. Appl Microbiol Biotechnol. 90: 1285-93. Link

Welte C., Deppenmeier U* (2011) Membrane-bound electron transport in Methanosaeta thermophila. J Bacteriol. 193:2868-70.

Welte C., Deppenmeier U* (2011) Re-evaluation of the function of the F420 dehydrogenase in electron transport of Methanosarcina mazei. FEBS J. 278: 1277-87.

Krätzer C., Welte C., Dörner K., Friedrich T., Deppenmeier U.* (2011) Methanoferrodoxin represents a new class of superoxide reductase containing an iron-sulfur-cluster. FEBS J. 278: 442-51.



Kallnik, V., Meyer, M., Deppenemeier, U., Schweiger, P.* (2010) Construction of expression vectors for protein production in Gluconobacter oxydans. J Biotechnol. 150:460-5.

Rauch, B., Pahlke, J., Schweiger, P., Deppenmeier, U.* (2010) Characterization of enzymes involved in glucose and gluconate utilization in the central metabolism of Gluconobacter oxydans. Appl Microbiol Biotechnol. 88:711-718. Link

Welte, C., Krätzer, C., Deppenmeier, U.* (2010) Involvement of Ech hydrogenase in energy conservation of Methanosarcina mazei. FEBS J. 277:3396-3403.

F1000Prime Recommended

Schweiger P., Gross H., Deppenmeier U.* (2010) Characterization of two aldo-keto reductases from Gluconobacter oxydans 621H capable of regio- and stereoselective alpha-ketocarbonyl reduction. Appl Microbiol Biotechnol. 87:1415-1426. Link

Welte C., Kallnik V., Grapp M., Bender G., Ragsdale S., Deppenmeier U.* (2010) Function of Ech hydrogenase in ferredoxin-dependent, membrane-bound electron transport in Methanosarcina mazei. J Bacteriol. 192:674-678.

Schweiger P, Deppenmeier U.* (2010) Analysis of aldehyde reductases from Gluconobacter oxydans 621H. Appl Microbiol Biotechnol. 85:1025-1031. Link


2005 - 2009

Krätzer C, Carini P, Hovey R, Deppenmeier U. (2009) Transcriptional profiling of methyltransferase genes during growth of Methanosarcina mazei on trimethylamine. J Bacteriol. 191:5108-5115.

Deppenmeier, U.* and Ehrenreich, A.* (2009) Physiology of acetic acid bacteria in light of the genome sequence of Gluconobacter oxydans. J. Mol. Microbiol. Biotechnol. 16: 69-80.

Schweiger, P., Gross, H., Wesener, S. and Deppenmeier, U.* (2008) Vinyl ketone reduction by three distinct Gluconobacter oxydans 621H enzymes. Appl. Microbiol. Biotechnol. 80: 995-1006. Link

Pflüger K., Ehrenreich A., Salmon K., Gunsalus R.P., Deppenmeier U., Gottschalk G., Müller, V. (2007) Identification of genes involved in salt adaptation in the archaeon Methanosarcina mazei Gö1 using genome-wide gene expression profiling. FEMS Microbiol Lett. 277: 79-89.

Deppenmeier, U., Müller, V. (2007) Life close to the thermodynamic limit: How methanogenic archaea conserve energy. Results Probl. Cell Differ. 45:123-152.

Schweiger, P., Volland, S. and Deppenmeier, U.* (2007) Overproduction and characterization of two distinct aldehyde-oxidizing enzymes from Gluconobacter oxydans 621H. J. Mol. Microbiol. Biotechnol. 13:147-155.

Veit, K., Ehlers, C., Ehrenreich, A. Salmon, K., Gunsalus, R., Hovey, R., Deppenmeier, U., Schmitz, R. (2006) Global transcriptional analysis of Methanosarcina mazei strain Gö1 under different nitrogen availabilities. Mol Genet Genomics 276: 41-55. Link

Prust, M. Hoffmeister, H. Liesegang, A. Wiezer, W.F. Fricke, A. Ehrenreich, G. Gottschalk, U. Deppenmeier* (2005) Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans. Nature Biotechnol. 23: 195-200.

Ehlers, C., Weidenbach, K., Veit, K. Deppenmeier, U., Metcalf, W.W., Schmitz, R. (2005) Development of genetic methods and construction of a chromosomal glnK1 mutant in Methanosarcina mazei strain Gö1. Mol Genet Genomics 273:290-298. Link

R. Hovey, S. Lentes, A. Ehrenreich, K. Salmon, G. Gottschalk, R. P. Gunsalus and U. Deppenmeier* (2005) DNA microarray analysis of Methanosarcina mazei during growth on methanol and acetate. Mol Genet Genomics 273:225-239. Link


2000 - 2004

Deppenmeier, U.* (2004) The membrane-bound electron transport system of Methanosarcina species. J. Bioenerg. Biomembr. 36: 55-64.

Klunker, D., Haas, B., Hirtreiter, A., Figueiredo, L., Naylor, D.J., Pfeifer, G., Muller, V., Deppenmeier, U., Gottschalk, G., Hartl, F.U., Hayer-Hartl, M. (2003) Coexistence of group I and group II chaperonins in the archaeon Methanosarcina mazei. J. Biol. Chem. 278: 33256-33267.

Deppenmeier, U.* Johann, A., Hartsch, T., et al. (2002) The genome of Methanosarcina mazei: Evidence for lateral gene transfer between Bacteria and Archaea. J. Mol. Microbiol. Biotechnol. 4: 453-461.

Deppenmeier, U.*, Hoffmeister, M., Prust C. (2002) Biochemistry and biotechnological applications of Gluconobacter strains. Appl. Microbiol. Biotechnol. 60: 233-242. Link

Deppenmeier U.* (2002) Redox-driven proton translocation in methanogenic Archaea. Cell. Mol. Life Sci. 59:1-21.

Deppenmeier, U.* (2002) The unique biochemistry of methanogenesis. Prog. Nucl. Acid Res. Mol Biol. 71: 223-283.

Bäumer, S., Lentes, S., Gottschalk, G. and Deppenmeier, U.* (2002) Identification and analysis of proton-translocating pyrophosphatases in the methanogenic archaeon Methanosarcina mazei. Archaea 1: 1-7.

Deppenmeier, U. (2001) Redox-getriebene Protonentranslokation in methanogenen Archaea. Biospektrum 1/2001: 39-40.

Murakami, E., Deppenmeier, U., Ragsdale, S. W. (2001) Characterization of the intramolecular electron transfer pathway from 2-hydroxyphenazine to the heterodisulfide reductase from Methanosarcina thermophila. J. Biol. Chem. 276: 2432-2439.

Schmitz, R. A., Daniel, R., Deppenmeier, U., Gottschalk, G. (2001) The anaerobic way of life. In 'The Prokaryotes'. third edition, B. Balows, H.G. Trüper, M. Dworkin, W. Harder, K.H. Schleifer, (eds.), Springer Verlag, New York.

Bäumer, S., Ide, T., Jacobi, C., Johann, A., Gottschalk, G., Deppenmeier, U.* (2000) The F420H2 dehydrogenase from Methanosarcina mazei Gö1 is a redox-driven proton pump closely related to NADH dehydrogenases. J. Biol. Chem. 275, 17968- 17973.

Beifuss, U., Tietze, M., Bäumer, S., Deppenmeier, U. (2000) Methanophenazin: Struktur, Synthese und Funktion eines neuartigen Cofaktors aus methanogenen Archaea. Angew. Chem. 112, 2583-2585.

Brüggemann, H., Falinski, F., Deppenmeier, U.* (2000) The F420H2:quinone oxidoreductase of Archaeoglobus fulgidus: Identification and overproduction of the F420H2-oxidizing subunit. Eur. J. Biochem. 267, 5810-5814.


Earlier than 1999

Brodersen, J., Bäumer, S., Abken, H.-J., Gottschalk, G., Deppenmeier, U.* (1999) Inhibition of membrane-bound electron transport of the methanogenic archaeon Methanosarcina mazei Gö1 by diphenyleneiodonium. Eur. J. Biochem. 259: 218-224.

Brodersen, J., Gottschalk, G., Deppenmeier, U.* (1999) Membrane-bound F420H2-dependent heterodisulfide reduction in Mc. voltae. Arch. Microbiol. 171: 115-121.

Ide, T., Bäumer, S., Deppenmeier, U.* (1999) Energy conservation by the H2:heterodisulfide oxidoreductase from Methanosarcina mazei Gö1: identification of two proton-translocating segments. J. Bacteriol. 181: 4076-4080.

Deppenmeier, U.*, Lienard, T., Gottschalk, G. (1999) Novel reactions involved in energy conservation by methanogenic archaea. FEBS Lett. 457: 291-297.

Deppenmeier, U. (1999) Methanophenazin, ein neues Coenzym der Methanogenese. Biospektrum 1/1999: 40-41.

Deppenmeier, U. (1999) Redox-getriebene Protonentanslokation in methanogenen Archaea. Habilitationsschrift, Universitätsbibliothek Göttingen.

Abken, H.-J., Tietze, M., Brodersen, J., Bäumer S., Beifuss, U., Deppenmeier, U.* (1998) Isolation and characterization of methanophenazine and the function of phenazines in membrane-bound electron transport of Methanosarcina mazei Gö1. J. Bacteriol. 180: 2027-2032.

Bäumer, S., Murakami, E., Brodersen, J. Gottschalk, G., Ragsdale, S. W. & Deppenmeier, U.* (1998) The F420H2:heterodisulfide oxidoreductase system from Methanosarcina species. FEBS Lett. 428: 295-298.

Abken, H.-J., Deppenmeier, U.* (1997) Purification and properties of an F420H2 dehydrogenase from Methanosarcina mazei Gö1. FEMS Lett. 154: 231-237.

Deppenmeier, U.*, Müller, V., Gottschalk, G. (1996) Pathways of energy conservation in methanogenic archaea. Arch. Microbiol. 165: 149-163. Link

Deppenmeier, U.*, Blaut, M., Lentes, S., Herzberg, C., Gottschalk, G. (1995) Analysis of the vhoGAC and vhtGAC operons from Methanosarcina mazei strain Gö1, both encoding a membrane-bound hydrogenase and a cytochrome b. Eur. J. Biochem. 227: 261-269.

Rech, S., Deppenmeier, U., Gunsalus, R. P. (1995) Regulation of the molybdate transport operon, modABCD, of Escherichia coli in response to molybdate availability. J. Bacteriol. 177: 1023-1029.

Maupin-Furlow, J. A., Rosentel, J. K., Lee, J. H., Deppenmeier, U., Gunsalus, R.P., Shanmugan, K. T. (1995) Genetic analysis of the modABCD operon (molybdate transport) of Escherichia coli. J. Bacteriol. 177: 4851-4856.

Deppenmeier, U.* (1995) Different structure and expression of the operons encoding the membrane-bound hydrogenases from Methanosarcina mazei Gö1. Arch. Microbiol. 164: 370-376. Link

Blaut, M., Deppenmeier, U., Kamlage, B., Westenberg, D., Becher, B., Müller, V., Gottschalk, G. (1993) Mechanisms of Energy Conservation in Methanogenic Bacteria. In : Microbial growth on C1 compounds (eds. J.C Murrell and D.P. Kelly), Intercept Ltd, Andover, England.

Haase, P., Deppenmeier, U., Blaut, M., Gottschalk, G. (1992) Purification and characterization of F420-dehydrogenase from Methanolobus tindarius. Eur. J. Biochem. 203: 527-531.

Deppenmeier, U., Blaut, M., Schmidt, B., Gottschalk, G. (1992) Purification and properties of a membrane-bound hydrogenase from Methanosarcina strain Gö1. Arch. Microbiol. 157: 505-511.

Deppenmeier, U., Blaut, M., Mahlmann, A., Gottschalk, G. (1991) Reduced coenzyme F420: heterodisulfide oxidoreductase, a proton-translocating redox system in methanogenic bacteria. Proc. Natl. Acad. Sci. USA 87: 9449-9453.

Deppenmeier, U., Blaut, M., Gottschalk, G. (1991) H2:heterodisulfide oxidoreductase, a second energy-conserving system in the methanogenic strain Gö1. Arch. Microbiol. 155: 272-277. Link

Deppenmeier, U. (1991) Identifizierung und Charakterisierung membrangebundener protonentranslozierender Redox-Systeme in methanogenen Bakterien. Dissertation, Universitätsbibliothek, Göttingen.

Blaut, M., Peinemann, S., Deppenmeier, U., Gottschalk, G. (1990) Energy transduction in vesicles of the methanogenic strain Gö1. FEMS Microbiol. Rev. 87: 367-372.

Deppenmeier, U., Blaut, M., Mahlmann, A., Gottschalk, G. (1990) Membrane-bound F420H2-dependent heterodisulfide reductase in methanogenic bacterium strain Gö1 and Methanolobus tindarius. FEBS Lett. 261: 199-203.

Deppenmeier, U., Blaut, M., Gottschalk, G. (1989) Dependence on membrane components of methanogenesis from methyl-CoM with formaldehyde or molecular hydrogen as electron donors. Eur. J. Biochem. 186: 317-323.

Mahlmann, A., Deppenmeier, U., Gottschalk, G. (1989) Methanofuran-b is required for CO2 formation from formaldehyde by Methanosarcina barkeri. FEMS Microbiol. Lett. 61: 115-120.

Deppenmeier, U., Blaut, M., Jussofi, A., Gottschalk, G. (1988) A methyl-CoM methylreductase system from methanogenic bacterium strain Gö1 not requiring ATP for activity. FEBS Lett. 241: 60-64.


 * corresponding author

1 first authors